| Pl. | Team | Sp. | ss-u-n | U | N | Tore | Diff. | Punkte | ||
|---|---|---|---|---|---|---|---|---|---|---|
| 1 |
 |
Fürth SpVgg Greuther Fürth | 33 | 20-9-4 20 | 9 | 4 | 71:25 | 46 | 69 | |
| 2 |
 |
Frankfurt (A) Eintracht Frankfurt (A) | 33 | 20-8-5 20 | 8 | 5 | 76:32 | 44 | 68 | |
| 3 |
 |
Düsseldorf Fortuna Düsseldorf | 33 | 16-13-4 16 | 13 | 4 | 62:33 | 29 | 61 | |
| 4 |
 |
Paderborn SC Paderborn 07 | 33 | 17-10-6 17 | 10 | 6 | 51:37 | 14 | 61 | |
| 5 |
 |
St. Pauli (A) FC St. Pauli (A) | 33 | 17-8-8 17 | 8 | 8 | 54:34 | 20 | 59 | |
| 6 |
 |
1860 München TSV 1860 München | 33 | 17-6-10 17 | 6 | 10 | 61:44 | 17 | 57 | |
| 7 |
 |
Union 1. FC Union Berlin | 33 | 14-6-13 14 | 6 | 13 | 54:56 | -2 | 48 | |
| 8 |
 |
Dresden (N) Dynamo Dresden (N) | 33 | 12-8-13 12 | 8 | 13 | 49:51 | -2 | 44 | |
| 9 |
 |
Braunschweig (N) Eintracht Braunschweig (N) | 33 | 9-15-9 9 | 15 | 9 | 34:34 | 0 | 42 | |
| 10 |
 |
Duisburg MSV Duisburg | 33 | 10-8-15 10 | 8 | 15 | 40:45 | -5 | 38 | |
| 11 |
 |
Ingolstadt FC Ingolstadt 04 | 33 | 8-13-12 8 | 13 | 12 | 42:55 | -13 | 37 | |
| 12 |
 |
Bochum VfL Bochum | 33 | 10-7-16 10 | 7 | 16 | 40:53 | -13 | 37 | |
| 13 |
 |
FSV Frankfurt FSV Frankfurt | 33 | 7-13-13 7 | 13 | 13 | 42:58 | -16 | 34 | |
| 14 |
 |
Cottbus Energie Cottbus | 33 | 7-11-15 7 | 11 | 15 | 28:48 | -20 | 32 | |
| 15 |
 |
Aue Erzgebirge Aue | 33 | 7-11-15 7 | 11 | 15 | 29:54 | -25 | 32 | |
| 16 |
 |
Karlsruhe Karlsruher SC | 33 | 8-6-19 8 | 6 | 19 | 33:60 | -27 | 30 | |
| 17 |
 |
Aachen Alemannia Aachen | 33 | 5-13-15 5 | 13 | 15 | 28:46 | -18 | 28 | |
| 18 |
 |
Rostock (N) Hansa Rostock (N) | 33 | 5-11-17 5 | 11 | 17 | 32:61 | -29 | 26 |